URL Form
http://www.rnalocate.org/show_search?searchType=exact&dataset=**&Keyword=**&category=**&species=**&sources=**&score1=**&score2=**
- dataset = The RNA Symbol/ID or subcellular localization name of Gene Ontology or Gene Ontology ID that you want to search
- Keyword = The dataset category that you want to search
- category = The RNA category that you want to search
- species = The species that you want to search
- sources = The data source that you want to search
- score1 = The score interval that you want to limit (lower limit)
- score2 = The score interval that you want to limit (upper limit)
Specification of Tag Values
- For "dataset" tag:
| Valid Values | Note |
|---|---|
| Symbol | RNA Symbol |
| ENmiRID | RNA ID |
| SUBCELLULAR | subcellular localization Name |
| GO_ID | Gene Ontology ID |
- For "category" tag:
| Valid Values | Note |
|---|---|
| All | don't limit category |
| mRNA | category limit to 'mRNA' |
| miRNA | category limit to 'miRNA' |
| lncRNA | category limit to 'lncRNA' |
- For " species " tag:
| Valid Values | Note |
|---|---|
| All | don't limit species |
| Homo+sapiens | species limit to 'Homo sapiens' |
| Mus+musculus | species limit to 'Mus musculus' |
- For " sources " tag:
| Valid Values | Note |
|---|---|
| experiment | the data source is experiment validation |
| Strong+Experimental+Data | the data source is experiment validation which experimental method is strong evidence |
| Weak+Experimental+Data | the data source is experiment validation which experimental method is weak evidence |
| predict | the data source is computational prediction |
- For " score1 " and "score2" tag:
| Valid Values | Note |
|---|---|
| any decimal |
Example
- Searching for experimental data which include 'hsa-miR-21-5p' as keyword:
- http://www.rnalocate.org/show_search?searchType=exact&dataset=Symbol&Keyword=hsa-miR-21-5p&category=miRNA&species=All&sources=experiment&score1=0.0&score2=1.0
- Searching for computational prediction data which include 'Ribosome' as keyword with score between 0 and 0.3 and the RNA category is lncRNA:
- http://www.rnalocate.org/show_search?searchType=exact&dataset=SUBCELLULAR&Keyword=Ribosome&category=lncRNA&species=All&sources=predict&score1=0.0&score2=0.3
- Searching for experimental data in Homo sapiens which include 'hsa-miR-21-5p' as keyword with score between 0.3 and 0.9 and the experimental method is strong evidence:
- http://www.rnalocate.org/show_search?searchType=exact&dataset=Symbol&Keyword=hsa-miR-21-5p&category=miRNA&species=Homo+sapiens&sources=Strong+Experimental+Data&score1=0.3&score2=0.9