Basic Information
| Dataset | PRJEB49479 |
|---|---|
| Status | 2022-01-24 |
| Species | Homo sapiens |
| Source | EBI ENA |
| Subcellular Localization | cytosol|ER|Golgi apparatus|lysosome|mitochondria|nucleus|peroxisome|plasma membrane |
| PMID | 38036857 |
| Title | A system-wide quantitative map of RNA and protein subcellular localisation dynamics |
| Citation | Villanueva, E., Smith, T., Pizzinga, M., Elzek, M., Queiroz, R. M. L., Harvey, R. F., … & Lilley, K. S. (2023). System-wide analysis of rna and protein subcellular localization dynamics. Nature Methods, 21(1), 60-71. |
| Experimental Design | LOPIT and HPA classifications were standardized to eight localizations that were interrogated with both approaches; cytosol, ER, Golgi apparatus, lysosome, mitochondria, nucleus, peroxisome and plasma membrane. |
Sample Information
| BioProject | Sample Name | Localization | Treatment | Source | Label |
|---|---|---|---|---|---|
| PRJEB49479 | ERS9590855 | loc1 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-1 |
| PRJEB49479 | ERS9590856 | loc2 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-2 |
| PRJEB49479 | ERS9590857 | loc3 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-3 |
| PRJEB49479 | ERS9590858 | loc4 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-4 |
| PRJEB49479 | ERS9590859 | loc5 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-5 |
| PRJEB49479 | ERS9590860 | loc6 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-6 |
| PRJEB49479 | ERS9590861 | loc7 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-7 |
| PRJEB49479 | ERS9590862 | loc8 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-1-8 |
| PRJEB49479 | ERS9590863 | loc1 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-1 |
| PRJEB49479 | ERS9590864 | loc2 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-2 |
| PRJEB49479 | ERS9590865 | loc3 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-3 |
| PRJEB49479 | ERS9590866 | loc4 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-4 |
| PRJEB49479 | ERS9590867 | loc5 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-5 |
| PRJEB49479 | ERS9590868 | loc6 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-6 |
| PRJEB49479 | ERS9590869 | loc7 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-7 |
| PRJEB49479 | ERS9590870 | loc8 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-2-8 |
| PRJEB49479 | ERS9590871 | loc1 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-1 |
| PRJEB49479 | ERS9590872 | loc2 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-2 |
| PRJEB49479 | ERS9590873 | loc3 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-3 |
| PRJEB49479 | ERS9590874 | loc4 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-4 |
| PRJEB49479 | ERS9590875 | loc5 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-5 |
| PRJEB49479 | ERS9590876 | loc6 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-6 |
| PRJEB49479 | ERS9590877 | loc7 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-7 |
| PRJEB49479 | ERS9590878 | loc8 | dLoRNA-Control | U-2 OS cells | Density-LoRNA-Control-3-8 |
| PRJEB49479 | ERS9590879 | loc1 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-1 |
| PRJEB49479 | ERS9590880 | loc2 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-2 |
| PRJEB49479 | ERS9590881 | loc3 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-3 |
| PRJEB49479 | ERS9590882 | loc4 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-4 |
| PRJEB49479 | ERS9590883 | loc5 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-5 |
| PRJEB49479 | ERS9590884 | loc6 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-6 |
| PRJEB49479 | ERS9590885 | loc7 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-7 |
| PRJEB49479 | ERS9590886 | loc8 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-1-8 |
| PRJEB49479 | ERS9590887 | loc1 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-1 |
| PRJEB49479 | ERS9590888 | loc2 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-2 |
| PRJEB49479 | ERS9590889 | loc3 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-3 |
| PRJEB49479 | ERS9590890 | loc4 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-4 |
| PRJEB49479 | ERS9590891 | loc5 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-5 |
| PRJEB49479 | ERS9590892 | loc6 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-6 |
| PRJEB49479 | ERS9590893 | loc7 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-7 |
| PRJEB49479 | ERS9590894 | loc8 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-2-8 |
| PRJEB49479 | ERS9590895 | loc1 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-1 |
| PRJEB49479 | ERS9590896 | loc2 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-2 |
| PRJEB49479 | ERS9590897 | loc3 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-3 |
| PRJEB49479 | ERS9590898 | loc4 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-4 |
| PRJEB49479 | ERS9590899 | loc5 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-5 |
| PRJEB49479 | ERS9590900 | loc6 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-6 |
| PRJEB49479 | ERS9590901 | loc7 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-7 |
| PRJEB49479 | ERS9590902 | loc8 | dLoRNA-UPR | U-2 OS cells | Density-LoRNA-UPR-3-8 |
| PRJEB49479 | ERS9609019 | loc1 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-1-1 |
| PRJEB49479 | ERS9609020 | loc2 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-1-2 |
| PRJEB49479 | ERS9609021 | loc3 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-1-3 |
| PRJEB49479 | ERS9609022 | loc4 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-1-4 |
| PRJEB49479 | ERS9609023 | loc5 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-1-5 |
| PRJEB49479 | ERS9609024 | loc1 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-2-1 |
| PRJEB49479 | ERS9609025 | loc2 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-2-2 |
| PRJEB49479 | ERS9609026 | loc3 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-2-3 |
| PRJEB49479 | ERS9609027 | loc4 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-2-4 |
| PRJEB49479 | ERS9609028 | loc5 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-2-5 |
| PRJEB49479 | ERS9609029 | loc1 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-3-1 |
| PRJEB49479 | ERS9609030 | loc2 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-3-2 |
| PRJEB49479 | ERS9609031 | loc3 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-3-3 |
| PRJEB49479 | ERS9609032 | loc4 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-3-4 |
| PRJEB49479 | ERS9609033 | loc5 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-3-5 |
| PRJEB49479 | ERS9609034 | loc1 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-4-1 |
| PRJEB49479 | ERS9609035 | loc2 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-4-2 |
| PRJEB49479 | ERS9609036 | loc3 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-4-3 |
| PRJEB49479 | ERS9609037 | loc4 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-4-4 |
| PRJEB49479 | ERS9609038 | loc5 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-4-5 |
| PRJEB49479 | ERS9609039 | loc1 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-5-1 |
| PRJEB49479 | ERS9609040 | loc2 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-5-2 |
| PRJEB49479 | ERS9609041 | loc3 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-5-3 |
| PRJEB49479 | ERS9609042 | loc4 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-5-4 |
| PRJEB49479 | ERS9609043 | loc5 | sLoRNA | U-2 OS cells | Sedimentation-LoRNA-Control-5-5 |
| PRJEB49479 | ERS9590903 | total | dTotal-Control | U-2 OS cells | Total-Control-1 |
| PRJEB49479 | ERS9590904 | total | dTotal-Control | U-2 OS cells | Total-Control-2 |
| PRJEB49479 | ERS9590905 | total | dTotal-Control | U-2 OS cells | Total-Control-3 |
| PRJEB49479 | ERS9590906 | total | dTotal-UPR | U-2 OS cells | Total-UPR-1 |
| PRJEB49479 | ERS9590907 | total | dTotal-UPR | U-2 OS cells | Total-UPR-2 |
| PRJEB49479 | ERS9590908 | total | dTotal-UPR | U-2 OS cells | Total-UPR-3 |
Subcellular Localization Number
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Localization Differential Analysis
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Specific Subcellular Localization
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Dynamic RNA Localization
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Specific Enrichment Analysis
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