Basic Information

Dataset GSE90869
Status 2018-01-01
Species Mus musculus
Source NCBI GEO
Subcellular Localization cytoplasm|RNP granule
PMID 29576526
Title Transcriptome-wide landscape of subcellular mRNA redistribution in cell stress
Citation Namkoong S, Ho A, Woo YM, Kwak H et al. Systematic Characterization of Stress-Induced RNA Granulation. Mol Cell 2018 Apr 5;70(1):175-187.e8.
Experimental Design 24 samples are analyzed, which include 3 replicates for control (DMSO) cytoplasmic fraction, 3 replicates of control (DMSO) RNP granule fraction, 3 replicates of Thapsigargin treated cytoplasmic fraction, 3 replicates of Thapsigargin treated RNP granule fraction, 2 replicates of control (H2O) cytoplasmic fraction, 2 replicates of control (H2O) RNP granule fractions, 2 replicates of heat shock (HS) treated cytoplsmic fraction (HS), 2 replicates of heat shock (HS) treated RNP granule fraction, 2 replicates of arsenite treated cytoplasmic fraction, and 2 replicates of arsenite treated RNP granule fraction.

Sample Information

BioProject Sample Name Localization Treatment Source Label
PRJNA356247 GSM2416769 Cytoplasm DMSO NIH3T3 cells Cytoplasmic DMSO treated sample replicate 1
PRJNA356247 GSM2416770 Cytoplasm DMSO NIH3T3 cells Cytoplasmic DMSO treated sample replicate 2
PRJNA356247 GSM2416771 Cytoplasm DMSO NIH3T3 cells Cytoplasmic DMSO treated sample replicate 3
PRJNA356247 GSM2416772 RNP granule DMSO NIH3T3 cells RNP granule fraction DMSO treated sample replicate 1
PRJNA356247 GSM2416773 RNP granule DMSO NIH3T3 cells RNP granule fraction DMSO treated sample replicate 2
PRJNA356247 GSM2416774 RNP granule DMSO NIH3T3 cells RNP granule fraction DMSO treated sample replicate 3
PRJNA356247 GSM2416775 Cytoplasm Thapsigargin NIH3T3 cells Cytoplasmic Thapsigargin treated sample replicate 1
PRJNA356247 GSM2416776 Cytoplasm Thapsigargin NIH3T3 cells Cytoplasmic Thapsigargin treated sample replicate 2
PRJNA356247 GSM2416777 Cytoplasm Thapsigargin NIH3T3 cells Cytoplasmic Thapsigargin treated sample replicate 3
PRJNA356247 GSM2416778 RNP granule Thapsigargin NIH3T3 cells RNP granule fraction Thapsigargin treated sample replicate 1
PRJNA356247 GSM2416779 RNP granule Thapsigargin NIH3T3 cells RNP granule fraction Thapsigargin treated sample replicate 2
PRJNA356247 GSM2416780 RNP granule Thapsigargin NIH3T3 cells RNP granule fraction Thapsigargin treated sample replicate 3
PRJNA356247 GSM2416781 Cytoplasm H2O NIH3T3 cells Cytoplasmic H2O treated sample replicate 1
PRJNA356247 GSM2416782 Cytoplasm H2O NIH3T3 cells Cytoplasmic H2O treated sample replicate 2
PRJNA356247 GSM2416783 RNP granule H2O NIH3T3 cells RNP granule fraction H2O treated sample replicate 1
PRJNA356247 GSM2416784 RNP granule H2O NIH3T3 cells RNP granule fraction H2O treated sample replicate 2
PRJNA356247 GSM2416785 Cytoplasm heat shock NIH3T3 cells Cytoplasmic heat shock treated sample replicate 1
PRJNA356247 GSM2416786 Cytoplasm heat shock NIH3T3 cells Cytoplasmic heat shock treated sample replicate 2
PRJNA356247 GSM2416787 RNP granule heat shock NIH3T3 cells RNP granule fraction heat shock treated sample replicate 1
PRJNA356247 GSM2416788 RNP granule heat shock NIH3T3 cells RNP granule fraction heat shock treated sample replicate 2
PRJNA356247 GSM2416789 Cytoplasm arsenite NIH3T3 cells Cytoplasmic arsenite treated sample replicate 1
PRJNA356247 GSM2416790 Cytoplasm arsenite NIH3T3 cells Cytoplasmic arsenite treated sample replicate 2
PRJNA356247 GSM2416791 RNP granule arsenite NIH3T3 cells RNP granule fraction arsenite treated sample replicate 1
PRJNA356247 GSM2416792 RNP granule arsenite NIH3T3 cells RNP granule fraction arsenite treated sample replicate 2

Subcellular Localization Number

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Dynamic RNA Localization

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Specific RNA Ratio

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