Basic Information
| Dataset | GSE215768 |
|---|---|
| Status | 2022-11-15 |
| Species | Homo sapiens |
| Source | NCBI GEO |
| Subcellular Localization | Cytosol|ER|TISgranule |
| Title | Cytoplasmic Location of Translation Controls Protein Output [RNA-seq] |
| Citation | https://www.biorxiv.org/content/10.1101/2022.11.04.515216v1.full.pdf |
| Experimental Design | To identify compartment-specific cellular functions, we used fluorescent particle sorting to isolate TIS granules, the ER surface, and the cytosol and determined their mRNA contents. |
Sample Information
| BioProject | Sample Name | Localization | Treatment | Source | Label |
|---|---|---|---|---|---|
| PRJNA890585 | GSM6638342 | cytosol | None | HEK293T | Cytosol_untransfected_rep1 |
| PRJNA890585 | GSM6638343 | cytosol | None | HEK293T | Cytosol_untransfected_rep2 |
| PRJNA890585 | GSM6638344 | ER | CaPO4 transfection with GFP-SEC61B | HEK293T | ER_transfected_SEC61B_rep1 |
| PRJNA890585 | GSM6638345 | ER | CaPO4 transfection with GFP-SEC61B | HEK293T | ER_transfected_SEC61B_rep2 |
| PRJNA890585 | GSM6638346 | TISgranule | CaPO4 transfection with mCherry-TIS11B | HEK293T | TISgranule_transfected_TIS11B_rep1 |
| PRJNA890585 | GSM6638347 | TISgranule | CaPO4 transfection with mCherry-TIS11B | HEK293T | TISgranule_transfected_TIS11B_rep2 |
| PRJNA890585 | GSM6638348 | TISgranule | CaPO4 transfection with mCherry-TIS11B | HEK293T | TISgranule_transfected_TIS11B_rep3 |
Subcellular Localization Number
RNA Type:
Condition:
Localization Differential Analysis
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Localization:
Condition:
Method:
Specific Subcellular Localization
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Method:
Dynamic RNA Localization
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Method:
Specific Enrichment Analysis
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Localization:
Condition:
Method:
Enrichment:
Specific RNA Ratio
RNA Type:
RNA Symbol:
TPM:
