Basic Information
| Dataset | GSE205553 |
|---|---|
| Status | 2022-12-01 |
| Species | Homo sapiens |
| Source | NCBI GEO |
| Subcellular Localization | cytoplasm|nuclear |
| PMID | 38286993 |
| Title | Organelle-specific RNA Tagging Probes for Spatially Resolved Profiling of RNA Binding Proteome and Investigation upon Ferroptosis Induction |
| Citation | Sun H, Fu B, Qian X, Xu P et al. Nuclear and cytoplasmic specific RNA binding proteome enrichment and its changes upon ferroptosis induction. Nat Commun 2024 Jan 29;15(1):852. |
| Experimental Design | Comparative gene expression analysis of RNA-seq data from density gradient centrifugation enriched nuclear RNA, BLTF enriched nuclear RNA, density gradient centrifugation enriched cytoplasmic RNA and BETF enriched cytoplasmic RNA in HeLa cells. |
Sample Information
| BioProject | Sample Name | Localization | Treatment | Source | Label |
|---|---|---|---|---|---|
| PRJNA846316 | GSM6214555 | nuclear RNA | density gradient centrifugation | HeLa cells | HeLa cells, nuclear RNA |
| PRJNA846316 | GSM6214556 | cytoplasmic RNA | density gradient centrifugation | HeLa cells | HeLa cells, cytoplasmic RNA |
| PRJNA846316 | GSM6214557 | nuclear RNA | BLTF enrichment | HeLa cells | HeLa cells, BLTF enriched nuclear RNA |
| PRJNA846316 | GSM6214558 | cytoplasmic RNA | BETF enrichment | HeLa cells | HeLa cells, BETF enriched cytoplasmic RNA |
| PRJNA846316 | GSM7844578 | nuclear RNA | density gradient centrifugation | HeLa cells | HeLa cells, nuclear RNA, update |
| PRJNA846316 | GSM7844579 | cytoplasmic RNA | density gradient centrifugation | HeLa cells | HeLa cells, cytoplasmic RNA, update |
| PRJNA846316 | GSM7844580 | nuclear RNA | BLTF enrichment | HeLa cells | HeLa cells, BLTF enriched nuclear RNA, update |
| PRJNA846316 | GSM7844581 | cytoplasmic RNA | BETF enrichment | HeLa cells | HeLa cells, BETF enriched cytoplasmic RNA, update |
Subcellular Localization Number
RNA Type:
Condition:
Localization Differential Analysis
RNA Type:
Localization:
Condition:
Method:
Specific Subcellular Localization
RNA Type:
Method:
Dynamic RNA Localization
RNA Type:
Method:
Specific Enrichment Analysis
RNA Type:
Localization:
Condition:
Method:
Enrichment:
Specific RNA Ratio
RNA Type:
RNA Symbol:
TPM:
