Basic Information

Dataset GSE200004
Status 2022-04-05
Species Homo sapiens
Source NCBI GEO
Subcellular Localization Apical|Basal|Cytoplasm
PMID 36867563
Title RNA localization across the apicobasal axis of human epithelial cells
Citation Goering R, Arora A, Pockalny MC, Taliaferro JM. RNA localization mechanisms transcend cell morphology. Elife 2023 Mar 3;12.
Experimental Design Cells contained transgenic Halo-tagged proteins that were either apically, basally, or cytoplasmically localized. Cells were then subjected to Halo-seq RNA proximity labeling (Engel et al, Nuc Acids Res, 2021).

Sample Information

BioProject Sample Name Localization Genotype Source Label
PRJNA822431 GSM6001923 Apically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Apical Halo, streptavidin enriched, Rep1
PRJNA822431 GSM6001924 Apically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Apical Halo, streptavidin enriched, Rep2
PRJNA822431 GSM6001925 Apically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Apical Halo, streptavidin enriched, Rep3
PRJNA822431 GSM6001926 Apically localized total input RNA C2bbe1 cells C2bbe1 cells, Apical Halo, input RNA, Rep1
PRJNA822431 GSM6001927 Apically localized total input RNA C2bbe1 cells C2bbe1 cells, Apical Halo, input RNA, Rep2
PRJNA822431 GSM6001928 Apically localized total input RNA C2bbe1 cells C2bbe1 cells, Apical Halo, input RNA, Rep3
PRJNA822431 GSM6001929 Basally localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Basal Halo, streptavidin enriched, Rep1
PRJNA822431 GSM6001930 Basally localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Basal Halo, streptavidin enriched, Rep2
PRJNA822431 GSM6001931 Basally localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Basal Halo, streptavidin enriched, Rep3
PRJNA822431 GSM6001932 Basally localized total input RNA C2bbe1 cells C2bbe1 cells, Basal Halo, input RNA, Rep1
PRJNA822431 GSM6001933 Basally localized total input RNA C2bbe1 cells C2bbe1 cells, Basal Halo, input RNA, Rep2
PRJNA822431 GSM6001934 Basally localized total input RNA C2bbe1 cells C2bbe1 cells, Basal Halo, input RNA, Rep3
PRJNA822431 GSM6001935 Cytoplasmically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, streptavidin enriched, Rep1
PRJNA822431 GSM6001936 Cytoplasmically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, streptavidin enriched, Rep2
PRJNA822431 GSM6001937 Cytoplasmically localized streptavidin-enriched RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, streptavidin enriched, Rep3
PRJNA822431 GSM6001938 Cytoplasmically localized total input RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, input RNA, Rep1
PRJNA822431 GSM6001939 Cytoplasmically localized total input RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, input RNA, Rep2
PRJNA822431 GSM6001940 Cytoplasmically localized total input RNA C2bbe1 cells C2bbe1 cells, Cytoplasmic Halo, input RNA, Rep3

Subcellular Localization Number

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Localization Differential Analysis

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Specific Subcellular Localization

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Dynamic RNA Localization

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Specific Enrichment Analysis

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Specific RNA Ratio

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